That brought Gibbons out of the dugout as he decided to challenge the call. Following a review of three minutes, 16 seconds it was ruled that the call on the field stood, meaning there was not enough video evidence to confirm or overrule the original decision.
Gibbons is now 0-for-6 in challenges this year, but the club did experience some luck earlier in the game when the Pirates unsuccessfully challenged a safe call at first base in the fourth, leading to a bigger inning for the Blue Jays.
The Blue Jays had already scored three runs in the inning to take a 4-0 lead when Josh Thole hit a two-out grounder deep into the second-base hole, from where Neil Walker's throw to first baseman Gaby Sanchez was ruled tardy by Gibson.
Pittsburgh manager Clint Hurdle challenged the call, which also stood following the replay review.
Pitcher R.A. Dickey followed with a grounder to short that was booted for an error by Clint Barmes, prolonging the inning. Jose Reyes followed by drawing a walk to load the bases, then Melky Cabrera also walked to force in a run and prompt Hurdle to remove left-hander Francisco Liriano from the game.
Tom Singer is a reporter for MLB.com and writes an MLBlog Change for a Nickel. He can also be found on Twitter @Tom_Singer. This story was not subject to the approval of Major League Baseball or its clubs.