Jones was given the day off on Monday after the Braves played Sunday night. Gonzalez said the retiring third baseman will be in the lineup for the final two games of the series at Marlins Park.
With Jones out of the lineup, Martin Prado was at third with Jeff Baker making his first start of the season in left field. Baker batted eighth, while a shift in the order had Andrelton Simmons batting second for just the second time this season.
"I'd like to take a look at [Baker] a little bit," Gonzalez said. "I didn't want to put Baker in the two-hole. I figured Simmons has a little bit of speed."